Multi-objective evolutionary algorithms (MOEAs) have been efficiently applied to Search-Based Software Engineering (SBSE) problems. However, skilled software engineers waste significant effort designing such algorithms for a particular problem, adapting them, selecting operators and configuring parameters. Hyper-heuristics can help in these tasks by dynamically selecting or creating heuristics. Despite of such advantages, we observe a lack of works regarding this subject in the SBSE field. Considering this fact, this work introduces HITO, a Hyper-heuristic for the Integration and Test Order Problem. It includes a set of well-defined steps and is based on two selection functions (Choice Function and Multi-armed Bandit) to select the best low-level heuristic (combination of mutation and crossover operators) in each mating. To perform the selection, a quality measure is proposed to assess the performance of low-level heuristics throughout the evolutionary process. HITO was implemented using NSGA-II and evaluated to solve the integration and test order problem in seven systems. The introduced hyper-heuristic obtained the best results for all systems, when compared to a traditional algorithm.